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| Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
26/04/2023 |
Actualizado : |
19/06/2023 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
REBOLLO, I.; SCHEFFEL, S.; BLANCO, P.H.; MOLINA, F.; MARTÍNEZ, S.; CARRACELAS, G.; AGUILAR, I.; PÉREZ DE VIDA, F.; ROSAS, J.E. |
Afiliación : |
MARÍA INÉS REBOLLO PANUNCIO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Department of Statistics, College of Agriculture, Universidad de la República, Montevideo, Uruguay; SHEILA SCHEFFEL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Department of Statistics, College of Agriculture, Universidad de la República, Montevideo, Uruguay; PEDRO HORACIO BLANCO BARRAL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FEDERICO MOLINA CASELLA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; SEBASTIÁN MARTÍNEZ KOPP, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; JULIO GONZALO CARRACELAS GARRIDO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BLAS PEREZ DE VIDA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; JUAN EDUARDO ROSAS CAISSIOLS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; Department of Statistics, College of Agriculture, Universidad de la República, Montevideo, Uruguay. |
Título : |
Consolidating twenty-three years of historical data from an irrigated subtropical rice breeding program in Uruguay. |
Fecha de publicación : |
2023 |
Fuente / Imprenta : |
Crop Science, 2023. https://doi.org/10.1002/csc2.20955 - [Article in Press]. |
ISSN : |
1435-0653 |
DOI : |
10.1002/csc2.20955 |
Idioma : |
Inglés |
Notas : |
Article history: First published 15 March 2023. -- Corresponding author: jrosas@inia.org.uy -- |
Contenido : |
Breeding programs generate vast amount of data which are often scattered in separate files. This hinders the application of modern breeding tools such as multi-environment analyses and genomic selection. This research work describes the process of consolidating 23 years of phenotypic, pedigree, and genomic records from the Uruguayan national rice (Oryza sativa L.) breeding program, and the features and structure of the resulting database. Using a custom-made R code, we gathered all the available data from 1997 to 2020 corresponding to field trials, blast disease evaluation nurseries, laboratory analyses of milling and cooking quality, pedigree information, and genomic information for selected advanced breeding lines, and organized it into a relational database. Records of 996 trials in 12 locations over a span of 23 years, 91,636 field plots with information on 14 phenotypic variables, pedigree for 19,447 genotypes, and genomic information regarding 61,260 single nucleotide polymorphism (SNP) markers for 965 genotypes were recovered. The dataset is structured in trials, phenotypes, lines, genomic information, and SNP tables in an easy-to-access relational database, which will be a valuable resource for rice breeding. © 2023 American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America |
Palabras claves : |
Breeding program; Breeding trials; Phenotypic data. |
Thesagro : |
ORYZA SATIVA L. |
Asunto categoría : |
F30 Genética vegetal y fitomejoramiento |
Marc : |
LEADER 02322naa a2200301 a 4500 001 1064059 005 2023-06-19 008 2023 bl uuuu u00u1 u #d 022 $a1435-0653 024 7 $a10.1002/csc2.20955$2DOI 100 1 $aREBOLLO, I. 245 $aConsolidating twenty-three years of historical data from an irrigated subtropical rice breeding program in Uruguay.$h[electronic resource] 260 $c2023 500 $aArticle history: First published 15 March 2023. -- Corresponding author: jrosas@inia.org.uy -- 520 $aBreeding programs generate vast amount of data which are often scattered in separate files. This hinders the application of modern breeding tools such as multi-environment analyses and genomic selection. This research work describes the process of consolidating 23 years of phenotypic, pedigree, and genomic records from the Uruguayan national rice (Oryza sativa L.) breeding program, and the features and structure of the resulting database. Using a custom-made R code, we gathered all the available data from 1997 to 2020 corresponding to field trials, blast disease evaluation nurseries, laboratory analyses of milling and cooking quality, pedigree information, and genomic information for selected advanced breeding lines, and organized it into a relational database. Records of 996 trials in 12 locations over a span of 23 years, 91,636 field plots with information on 14 phenotypic variables, pedigree for 19,447 genotypes, and genomic information regarding 61,260 single nucleotide polymorphism (SNP) markers for 965 genotypes were recovered. The dataset is structured in trials, phenotypes, lines, genomic information, and SNP tables in an easy-to-access relational database, which will be a valuable resource for rice breeding. © 2023 American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America 650 $aORYZA SATIVA L 653 $aBreeding program 653 $aBreeding trials 653 $aPhenotypic data 700 1 $aSCHEFFEL, S. 700 1 $aBLANCO, P.H. 700 1 $aMOLINA, F. 700 1 $aMARTÍNEZ, S. 700 1 $aCARRACELAS, G. 700 1 $aAGUILAR, I. 700 1 $aPÉREZ DE VIDA, F. 700 1 $aROSAS, J.E. 773 $tCrop Science, 2023. https://doi.org/10.1002/csc2.20955 - [Article in Press].
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| Acceso al texto completo restringido a Biblioteca INIA La Estanzuela. Por información adicional contacte bib_le@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
Fecha actual : |
15/01/2020 |
Actualizado : |
15/01/2020 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Circulación / Nivel : |
Internacional - -- |
Autor : |
CASTELLS, M.; GIANNITTI, F.; CAFFARENA, D.; CASAUX, M.L.; SCHILD, C.; CASTELLS, D.; RIET-CORREA, F.; VICTORIA, M.; PAREÑO, V.; COLINA, R. |
Afiliación : |
MATÍAS CASTELLS BAUER, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay./Laboratorio de Virología Molecular CENUR Litoral Norte, Centro Universitario de Salto, Universidad de la República Salto Uruguay.; FEDERICO GIANNITTI, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; RUBEN DARÍO CAFFARENA LEDESMA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MARÍA LAURA CASAUX, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CARLOS SCHILD, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; DANIEL CASTELLS, Centro de Investigación y Experimentación Dr. Alejandro Gallinal, Secretariado Uruguayo de la Lana, Ruta 7 km 140, Cerro Colorado, Florida, Uruguay.; FRANKLIN RIET-CORREA AMARAL, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; MATÍAS VISTORIA, Laboratorio de Virología Molecular CENUR Litoral Norte, Centro Universitario de Salto, Universidad de la República Salto Uruguay; VIVIANA PAREÑO, Sección de Virus Gastroentéricos, Instituto de Virología, CICV y A, INTA Castelar Buenos Aires Argentina.; RODNEY COLINA, Laboratorio de Virología Molecular, CENUR Litoral Norte, Centro Universitario de Salto, Universidad de la República, Rivera 1350, Salto, Uruguay. |
Título : |
Bovine coronavirus in Uruguay: genetic diversity, risk factors and transboundary introductions from neighboring countries. |
Fecha de publicación : |
2019 |
Fuente / Imprenta : |
Archives of Virology,2019 Nov, Vol. 164 (11), p. 2715-2724. DOI: https://10.1007/s00705-019-04384-w |
ISSN : |
1432-8798 (online) |
DOI : |
10.1007/s00705-019-04384-w |
Idioma : |
Inglés |
Notas : |
Article history:Received 26 June 2019/Accepted 30 July 2019/Published 27 August 2019. |
Contenido : |
Abstract: Bovine coronavirus (BCoV) is a recognized cause of severe neonatal calf diarrhea, with a negative impact on animal welfare, leading to economic losses to the livestock industry. Cattle production is one of the most important economic sectors in Uruguay. The aim of this study was to determine the frequency of BCoV infections and their genetic diversity in Uruguayan calves and to describe the evolutionary history of the virus in South America. The overall detection rate of BCoV in Uruguay was 7.8% (64/824): 7.7% (60/782) in dairy cattle and 9.5% (4/42) in beef cattle. The detection rate of BCoV in samples from deceased and live calves was 10.0% (6/60) and 7.6% (58/763), respectively. Interestingly, there was a lower frequency of BCoV detection in calves born to vaccinated dams (3.3%, 8/240) than in calves born to unvaccinated dams (12.2%, 32/263) (OR: 4.02, 95%CI: 1.81-8.90; p = 0.00026). The frequency of BCoV detection was higher in colder months (11.8%, 44/373) than in warmer months (1.5%, 3/206) (OR: 9.05, 95%CI: 2.77-29.53, p = 0.000013). Uruguayan strains grouped together in two different lineages: one with Argentinean strains and the other with Brazilian strains. Both BCoV lineages were estimated to have entered Uruguay in 2013: one of them from Brazil (95%HPD interval: 2011-2014) and the other from Argentina (95%HPD interval: 2010-2014). The lineages differed by four amino acid changes, and both were divergent from the Mebus reference strain. Surveillance should be maintained to detect possible emerging strains that can clearly diverge at the antigenic level from vaccine strains. MenosAbstract: Bovine coronavirus (BCoV) is a recognized cause of severe neonatal calf diarrhea, with a negative impact on animal welfare, leading to economic losses to the livestock industry. Cattle production is one of the most important economic sectors in Uruguay. The aim of this study was to determine the frequency of BCoV infections and their genetic diversity in Uruguayan calves and to describe the evolutionary history of the virus in South America. The overall detection rate of BCoV in Uruguay was 7.8% (64/824): 7.7% (60/782) in dairy cattle and 9.5% (4/42) in beef cattle. The detection rate of BCoV in samples from deceased and live calves was 10.0% (6/60) and 7.6% (58/763), respectively. Interestingly, there was a lower frequency of BCoV detection in calves born to vaccinated dams (3.3%, 8/240) than in calves born to unvaccinated dams (12.2%, 32/263) (OR: 4.02, 95%CI: 1.81-8.90; p = 0.00026). The frequency of BCoV detection was higher in colder months (11.8%, 44/373) than in warmer months (1.5%, 3/206) (OR: 9.05, 95%CI: 2.77-29.53, p = 0.000013). Uruguayan strains grouped together in two different lineages: one with Argentinean strains and the other with Brazilian strains. Both BCoV lineages were estimated to have entered Uruguay in 2013: one of them from Brazil (95%HPD interval: 2011-2014) and the other from Argentina (95%HPD interval: 2010-2014). The lineages differed by four amino acid changes, and both were divergent from the Mebus reference strain. Surveillance shou... Presentar Todo |
Palabras claves : |
CATTLE DISEASES; CORONAVIRUS; PLATAFORMA DE SALUD ANIMAL. |
Thesagro : |
EPIDEMIOLOGIA. |
Asunto categoría : |
E16 Enfermedades de los animales |
Marc : |
LEADER 02667naa a2200313 a 4500 001 1060611 005 2020-01-15 008 2019 bl uuuu u00u1 u #d 022 $a1432-8798 (online) 024 7 $a10.1007/s00705-019-04384-w$2DOI 100 1 $aCASTELLS, M. 245 $aBovine coronavirus in Uruguay$bgenetic diversity, risk factors and transboundary introductions from neighboring countries.$h[electronic resource] 260 $c2019 500 $aArticle history:Received 26 June 2019/Accepted 30 July 2019/Published 27 August 2019. 520 $aAbstract: Bovine coronavirus (BCoV) is a recognized cause of severe neonatal calf diarrhea, with a negative impact on animal welfare, leading to economic losses to the livestock industry. Cattle production is one of the most important economic sectors in Uruguay. The aim of this study was to determine the frequency of BCoV infections and their genetic diversity in Uruguayan calves and to describe the evolutionary history of the virus in South America. The overall detection rate of BCoV in Uruguay was 7.8% (64/824): 7.7% (60/782) in dairy cattle and 9.5% (4/42) in beef cattle. The detection rate of BCoV in samples from deceased and live calves was 10.0% (6/60) and 7.6% (58/763), respectively. Interestingly, there was a lower frequency of BCoV detection in calves born to vaccinated dams (3.3%, 8/240) than in calves born to unvaccinated dams (12.2%, 32/263) (OR: 4.02, 95%CI: 1.81-8.90; p = 0.00026). The frequency of BCoV detection was higher in colder months (11.8%, 44/373) than in warmer months (1.5%, 3/206) (OR: 9.05, 95%CI: 2.77-29.53, p = 0.000013). Uruguayan strains grouped together in two different lineages: one with Argentinean strains and the other with Brazilian strains. Both BCoV lineages were estimated to have entered Uruguay in 2013: one of them from Brazil (95%HPD interval: 2011-2014) and the other from Argentina (95%HPD interval: 2010-2014). The lineages differed by four amino acid changes, and both were divergent from the Mebus reference strain. Surveillance should be maintained to detect possible emerging strains that can clearly diverge at the antigenic level from vaccine strains. 650 $aEPIDEMIOLOGIA 653 $aCATTLE DISEASES 653 $aCORONAVIRUS 653 $aPLATAFORMA DE SALUD ANIMAL 700 1 $aGIANNITTI, F. 700 1 $aCAFFARENA, D. 700 1 $aCASAUX, M.L. 700 1 $aSCHILD, C. 700 1 $aCASTELLS, D. 700 1 $aRIET-CORREA, F. 700 1 $aVICTORIA, M. 700 1 $aPAREÑO, V. 700 1 $aCOLINA, R. 773 $tArchives of Virology,2019 Nov, Vol. 164 (11), p. 2715-2724. DOI: https://10.1007/s00705-019-04384-w
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